rs108392976 SNP Detail

Summary

• ID
  rs108392976
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122525297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TTACAATGCT AACTGTAAAA TTAGATATTC TGAGGCCCCA
  AAAGACTTTT TCAAGTTAGG ACATTATGTG TGTGCTGTGT GCATGTCCGT GTGTGTGTGT
  S
  TGTGTATGTG TATGTGTGTG TGTTAAGAGT GCAATTTGGA AGATGAAAGT GTAAAATGCT
  TTAAAATAAT TCAGGCCTTC ATATTTTTAA AAGGAGAAAG T                    
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135748540	ENSMUSSNP674652	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108392976					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122525297 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13771	CpG island 13771	713 bp distal
Pde5a	phosphodiesterase 5A, cGMP-specific	within coordinates
Rr584395	regulatory region 584395	324 bp distal
Rr584396	regulatory region 584396	1165 bp distal
Tssr31514	transcription start site region 31514	1913 bp downstream
Tssr31515	transcription start site region 31515	1779 bp downstream
Tssr31516	transcription start site region 31516	1754 bp downstream
Tssr31517	transcription start site region 31517	1719 bp downstream
Tssr31518	transcription start site region 31518	1591 bp downstream
Tssr31519	transcription start site region 31519	1529 bp downstream
Tssr31520	transcription start site region 31520	1495 bp downstream
Tssr31521	transcription start site region 31521	1409 bp downstream
Tssr31522	transcription start site region 31522	1387 bp downstream