rs108393101 SNP Detail

Summary

• ID
  rs108393101
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:15727975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CTTGCTTGGT TAGAGTCACA CCAAGTTATT TTATATAATT
  TGTGATGTTG TGAAGGGTGT TCTTTCCCTG CTTTCTTTCT CGGCATGTTT ATCCTTTGAG
  C
  TTTAGTAAAG TTTCTCTTAT GAATGTGGAA TATGTATCAT AGACATTCAG AATTGATAGT
  TCATCTTGGT AGATTTTACC TTTGATGAGT ATCTGTCCTT G                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147928321	ENSMUSSNP3590399	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108393101					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:15727975 () rs orientation: forward

Symbol	Name	Function Class
Gm21190	predicted gene, 21190	1479 bp downstream
Gm21847	predicted gene, 21847	within coordinates
Rr607454	regulatory region 607454	192 bp distal
Rr607455	regulatory region 607455	305 bp distal