rs108393262 SNP Detail

Summary

• ID
  rs108393262
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156313572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTGGGCCAA CCCTTATCCA GAATGAAGTC AGGGTCCCCA
  AAGTTTAATC AAATGCAAGA AAGAGGCCAC GTGCCTCTCG GGTTCCTAAG GCTATCTTCC
  Y
  CATTGGCCCC ACACTCCCAG ATCCCAGGAG CCTCAAGACT AGGATGACAG CCAGTCTCTG
  TTCCACTTGA ATGCAGAAGT GCCATTTTGC AGCCCCAGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148128857	ENSMUSSNP5037808	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321446053	CHEV_4_155603224	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs108393262					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156313572 () rs orientation: forward

Symbol	Name	Function Class
Klhl17	kelch-like 17	220 bp downstream
Mir7658	microRNA 7658	944 bp downstream
Plekhn1	pleckstrin homology domain containing, family N member 1	573 bp upstream
Rr606703	regulatory region 606703	119 bp distal
Rr606704	regulatory region 606704	542 bp distal
Tssr45022	transcription start site region 45022	577 bp upstream
Tssr45023	transcription start site region 45023	545 bp upstream
Tssr45024	transcription start site region 45024	306 bp upstream