rs108393596 SNP Detail

Summary

• ID
  rs108393596
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:48813809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T AGCTTAAGCT CCTGAACCAG TTGCTGACTC ACTTCGTTAT
  TAGATCCGTG CACATCATTA CCTCCGATTA AAATAATAAT AATAATAAAA TTCTCAACGG
  T
  GCCTTTCTTT CTTTTTTTTT TTTTTTTTTT TTTTTTTTGA CGCCACAGAA ATGTGCAAAA
  TAATCACGCC AGACAAGAAC AGGCCCCTCA GCCTACAGAC A                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	MSM/Ms
ss148115663	ENSMUSSNP1311193	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	MSM/Ms
rs108393596					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:48813809 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cip2a	cell proliferation regulating inhibitor of protein phosphatase 2A			739 bp upstream
Dzip3	DAZ interacting protein 3, zinc finger			Intron
				Noncoding-Transcript-Variant
Rr391755	regulatory region 391755			within coordinates
Rr516661	regulatory region 516661			within coordinates
Rr516662	regulatory region 516662			485 bp proximal
Rr516663	regulatory region 516663			753 bp proximal
Rr516664	regulatory region 516664			994 bp proximal
Tssr138707	transcription start site region 138707			751 bp upstream
Tssr141318	transcription start site region 141318			485 bp downstream
Tssr141319	transcription start site region 141319			635 bp downstream