rs108394258 SNP Detail

Summary

• ID
  rs108394258
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31427548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGGCATT TCAAGGTATC
  TGATTCTGAC ATGAGGCTCT AAGGCTAGGA TCTCTCGAGA GAATTACCAT TTGAGTTTCT
  AAGCAGCCTG GGGAAAGTCA CTTGTCTTTT GGGAAAATAT CTGGAATATC TAGTGACAAA
  ATAGAATGCA TGAGAAATTC CAGAGACAGC TTGGCTCAGC ACCACCGGGC TCATCCAAGT
  S
  CCCCTGCGCT CAGAGAGGAA AGAGAAGCTA CTGACCATGG TTAGAACATC CATCGTAAAC
  CTGCTGCTTA GCGGTGGTCC TCTCAGATCC TTACTCCCAC GGAGGCACAA GTCGGAGGTG
  TGCTTCAGGG AACCCGGGTC TCAGGGAGTG AGCCAAATAG CCCTTCAATG AGATAATAAA
  ACCCTGGCTA CCATGGAGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325358921	CHEV_17_31345519	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108394258					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31427548 () rs orientation: forward

Symbol	Name	Function Class
Rr339574	regulatory region 339574	within coordinates
Rr370214	regulatory region 370214	477 bp downstream
Tssr143654	transcription start site region 143654	462 bp downstream
Tssr147277	transcription start site region 147277	223 bp downstream
Tssr147278	transcription start site region 147278	239 bp downstream
Ubash3a	ubiquitin associated and SH3 domain containing, A	within coordinates