rs108394919 SNP Detail

Summary

• ID
  rs108394919
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:21575193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCGAGGGAG AACTTCACAG
  GAGCTTCTGA TACTGTAAGT ATCTCCACTC CAGTATGAAG GTTGGGTTTT CCTTTCTAGA
  CAGTAACTAT ACAGTCTACA CATTTTTCTA AGTGTATATT TCCAAACTAG GAGAAGGTTA
  AAAAAATGGA ATGAAGCATA TAAAAACATT TTTGAAGGAA AATCATTACA CATGATTGTA
  C
  GTGTGTGTAG TGTGTATAAA AATAAGCTGT TTTGCTTTGT GCGATGTAAG GGGGCTCTTG
  CTAATGAGTC ACATACCCGA GGTCAGGTTA CAGACATGTA CGCTGAGCTA GTCATCTTAG
  TTTTCCATGG ATAGTGCTGA TGCAGTCACC AACTCTCAAC ACTGAATAAT TTGACATAAT
  GTTTTTCTAA ACAATTTCTA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146182918	ENSMUSSNP1778519	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108394919					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:21575193 () rs orientation: forward

Symbol	Name	Function Class
1110059E24Rik	RIKEN cDNA 1110059E24 gene	within coordinates
Gm38486	predicted gene, 38486	1627 bp upstream
Gm59243	predicted gene, 59243	within coordinates
Rr356955	regulatory region 356955	1208 bp proximal
Rr364167	regulatory region 364167	209 bp proximal