rs108398308 SNP Detail

Summary

• ID
  rs108398308
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:74591975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGAGAGCA AAGTGGACAG
  TGTGTAGAAG TGACGAGAGC AGCCAACAGA AAGGCTGGGA ATGAAGGATG GTGACAGGAA
  CAGAGGGGAG CCTGGAGGTG GGTGCTCATT CACATTCTTT CCTGTTTCAA AGGCCTGGCT
  ACCAGTGGGC AGATCTCTCC CCTGGAGGCA AGAGACAGGG TGGACAGTAG GTGACAGAAA
  A
  CCCATTATCT GAGCAATGAA CTTAGAGAGC CTTACTTAGT CTCTTCCTTC TGAGGATCTG
  TCCCTCCCCA AGCTAGAGTA CAGACCAGGA CAAAGTGGGT GTTGTAAGTG TAACCAGTAT
  GCGGGGAAGG TTCTTCTTCC GGTCCTTTGA AGCTACCCTA ATAGGCAGTG AATTCCTTGT
  CTCTCCAGAG ACCCCAGGCA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148149538	ENSMUSSNP3638913	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108398308					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:74591975 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7176	CpG island 7176	570 bp proximal
Gm28976	predicted gene 28976	1191 bp downstream
Rr504331	regulatory region 504331	1415 bp distal
Rr504332	regulatory region 504332	146 bp distal
Rr504333	regulatory region 504333	588 bp proximal
Rr504334	regulatory region 504334	870 bp proximal
Rr504335	regulatory region 504335	1551 bp proximal
Them6	thioesterase superfamily member 6	1108 bp upstream
Tssr131582	transcription start site region 131582	1067 bp upstream
Tssr131583	transcription start site region 131583	1112 bp upstream
Tssr131584	transcription start site region 131584	1436 bp upstream
Tssr131585	transcription start site region 131585	1565 bp upstream
Tssr131586	transcription start site region 131586	1571 bp upstream