rs108400971 SNP Detail

Summary

• ID
  rs108400971
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:27936807 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGGGACA GAGTCCTTCT
  GCTCACGTCA TAACCACTGG CACGGGAGAC TGACCACTCA GAGAGTCACC TGAGTGCATC
  TGTCTCCCAT TCATCTCAGA CCTCTAAGGG AAAGGGCCTC GACCCAATGA GCAAGCACAG
  AATCCTCCAA AATTCCAAAG AGGAAAAAAA CAAGCAAAAC AAAAGAAAAA CCCCAAGCCA
  Y
  CACCAGCATC AACAGCCAAA GACAGCAACA GTGCTGTCGT GTGAAGCACA GGGGGGCCAG
  GACTCAGGGT CAGAAGGCAG GACAATCTGG GAGAGTCCCT TCTCTCCTCC CATGCTGCTC
  CACATGGGGG GAGGGGAGAG GCAGACTGAC TGATGCAAAT TCAAGGCTAG CCCAGTTTAC
  CGTGTCTCAC CTGACTTCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325349180	CHEV_17_27854778	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108400971					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:27936807 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8855	CpG island 8855	445 bp distal
Rr524285	regulatory region 524285	353 bp proximal
Rr524286	regulatory region 524286	989 bp proximal
Spdef	SAM pointed domain containing ets transcription factor	within coordinates