rs108401178 SNP Detail

Summary

• ID
  rs108401178
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:52140829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGATGCT TAAGCCACTG
  TCCAAGTCTC TTCTCCCACC CTGACCCACC CAAAAGCAGG GGCAAAGAGG TCAAGAAATG
  CGGATTTCGT AGGAGGGGAG GCTGGGCCCA GGGACCTTTT CAACTGGTGA AGCTCCAAAG
  AACTCTGAAA GGTCAAAGTA GCTGAAGGCT TGGACCCCCA AGCTAGGGAG AAATTGGACT
  S
  TATCAACTTT AACCCACTCC CCTGCTACTC CTTCCCCACA CAACCCCCAG CTCTAAGGAA
  GCTATCAACT AACAGGTCTT TTGTTTCCTG TTGTGTCGCC TTTGGGAAAT TTGCATTGAA
  CGTGACGATA GAAAATTACT ACTGTTTACT CGAAGTTAAG GGGGTTGCAG AACGAAAACA
  GTTTTTACTT TTCTCTTTGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398453338	MGP_WTSI_17_51973126	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	G	C	C	C	C	C	G	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108401178					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	G	C	C	C	C	C	G	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398453338	MGP_WTSI_17_51973126	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:52140829 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9312	CpG island 9312	170 bp distal
Gm6934	predicted gene 6934	within coordinates
Rr370288	regulatory region 370288	409 bp downstream
Rr528751	regulatory region 528751	1140 bp distal
Rr528752	regulatory region 528752	639 bp distal
Rr528753	regulatory region 528753	819 bp distal
Rr528754	regulatory region 528754	21 bp distal
Satb1	special AT-rich sequence binding protein 1	511 bp upstream
Tssr145166	transcription start site region 145166	1024 bp downstream
Tssr145167	transcription start site region 145167	1001 bp downstream
Tssr145168	transcription start site region 145168	976 bp downstream
Tssr145169	transcription start site region 145169	784 bp downstream
Tssr145170	transcription start site region 145170	764 bp downstream
Tssr145171	transcription start site region 145171	540 bp downstream
Tssr145172	transcription start site region 145172	661 bp upstream
Tssr148679	transcription start site region 148679	1906 bp upstream
Tssr148680	transcription start site region 148680	1168 bp upstream
Tssr148681	transcription start site region 148681	1147 bp upstream
Tssr148682	transcription start site region 148682	1123 bp upstream
Tssr148683	transcription start site region 148683	1104 bp upstream
Tssr148684	transcription start site region 148684	698 bp upstream
Tssr148685	transcription start site region 148685	663 bp upstream
Tssr148686	transcription start site region 148686	555 bp upstream
Tssr148687	transcription start site region 148687	531 bp upstream
Tssr148688	transcription start site region 148688	502 bp upstream