rs108401837 SNP Detail

Summary

• ID
  rs108401837
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:81253143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAAGAGAC AAGGTGTAAA
  CCTCAGAACA AGGAAAGAGG GCTTTCTCAT GGATTGAGCT CGCTGGTATA CCATTAAATC
  GAGGTGGCAT TCCAGCCTGG AATGGGGAGC GAAGGTCTGT CCTCCAAACA CTCCAAGTTC
  AGGATCTGTT TGAATTGGAC TTCGTATTCC CTAATTCACT AGTAAAGGCA GCTAAAGGGA
  K
  CTAAGACACC GGCTTTACTC ATTATTCAAC CTTCCAGATG ACCACCCTCC TCAGGGTCTA
  GGAAGCAGCT GAGGAGAGCC AAGGGCCAAG TCCTTGAAAG TAGACTTGCG CTCAGAGATT
  CTACCTGCCA CGCTCTTATG GTTGTGACAC TTTGTAGGTT GTCTTTATTG TTTTGTTATT
  GGGCTTTGCG TTGGTACAGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss399196571	MGP_WTSI_17_81345054	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	G	G	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108401837					SNP	G	G	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	G	G	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399196571	MGP_WTSI_17_81345054	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:81253143 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9543	CpG island 9543	466 bp distal
D17Mit258	DNA segment, Chr 17, Massachusetts Institute of Technology 258	850 bp proximal
Gm65830	predicted gene, 65830	565 bp upstream
Gm65833	predicted gene, 65833	1386 bp downstream
Rr340234	regulatory region 340234	within coordinates
Tmem178	transmembrane protein 178	within coordinates
Tssr145973	transcription start site region 145973	1857 bp downstream
Tssr145974	transcription start site region 145974	1710 bp downstream
Tssr145975	transcription start site region 145975	1070 bp downstream
Tssr145976	transcription start site region 145976	1043 bp downstream