rs108403685 SNP Detail

Summary

• ID
  rs108403685
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113876678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGACACTT CCACTTTTCA
  TAAATAAATA GTTCAAAATG GCAGAAGTAC AGTGAGGGCC ATTTTGGAAA TTTCTGTAAA
  TCCTGTTCTA GTCTCAGGCC AAATATTCTT CCTTTAATAC CTTTTAATAA TATAACTGAA
  ATCAGCAGCT CAGGCAACAA CTTTAAAAGT CAAAATTCTA ACATAATACT GACTAACAAT
  R
  TACTAACTTG ATACTCACAT GCTGAAAACA GTAAAAAAAA AAATACTAAA TTGCGTTTGA
  AAATGAACAG GGAACTTTGT ACACTACATG CAGAGAACAC AGGAGCCTTG AATCTGAGCT
  GTTCCAGGCA GGGTTTGTTG CTGTCCCATG GTGTGACATA ATGCTGCATG TGAAATACAC
  GCATGTACTC AAAACCAGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147245709	ENSMUSSNP2566261	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108403685					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113876678 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	1085 bp downstream
Rr562815	regulatory region 562815	487 bp distal
Rr562816	regulatory region 562816	8 bp proximal
Tssr600	transcription start site region 600	1365 bp downstream
Tssr601	transcription start site region 601	1375 bp downstream
Tssr19429	transcription start site region 19429	1087 bp upstream
Tssr19430	transcription start site region 19430	1182 bp upstream
Tssr19431	transcription start site region 19431	1262 bp upstream
Tssr19432	transcription start site region 19432	1358 bp upstream
Tssr19433	transcription start site region 19433	1924 bp upstream
Tssr19434	transcription start site region 19434	1977 bp upstream
Tssr25660	transcription start site region 25660	1114 bp downstream
Tssr25661	transcription start site region 25661	1131 bp downstream
Tssr25662	transcription start site region 25662	1188 bp downstream
Tssr25663	transcription start site region 25663	1251 bp downstream
Tssr25664	transcription start site region 25664	1281 bp downstream
Tssr25665	transcription start site region 25665	1389 bp downstream
Tssr25666	transcription start site region 25666	1956 bp downstream
Tssr25667	transcription start site region 25667	1983 bp downstream