rs108404341 SNP Detail

Summary

• ID
  rs108404341
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:48663812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCAGAAAT GAAGAAGCTG
  CATCTTAAAA GTTAGCAAAG AAAACTTTAT ATGCCCCAGT ACAGGGGAAT GCCAGGGCCA
  AAAAAATGGG AATGGGTGGG TAGGGAAGTG GGGGGTAGGG TATGGGGGAC TTTTGGGATA
  GCATTCTAAA TATAATTGAG GAAAATACGT AATAATAAAA AATATTTTAA AAAACAGTTA
  G
  CAAAGAGACT ACTTATGGAA GCAGTGTCAT CCCAAAGACA GAAGAGGACT TACAAGGGAC
  TTGTGAGACA GATCATGGGC AATATCTTTT CTCTCTTACT CAGCTAACTA TCCCTCCACT
  GTAACGAAGA CTCTCTCTTG CACTAGTGTC AAGACTATGA ACAGATGGGC CTCCTGCCCT
  GCTGGTGAGT AATTCCTCAA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148115353	ENSMUSSNP198854	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108404341					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:48663812 () rs orientation: forward

Symbol	Name	Function Class
Retnla	resistin like alpha	within coordinates
Tssr138680	transcription start site region 138680	962 bp downstream
Tssr138681	transcription start site region 138681	869 bp downstream
Tssr138682	transcription start site region 138682	818 bp downstream
Tssr138683	transcription start site region 138683	788 bp downstream
Tssr138684	transcription start site region 138684	754 bp downstream
Tssr138685	transcription start site region 138685	713 bp downstream
Tssr138686	transcription start site region 138686	594 bp downstream
Tssr138687	transcription start site region 138687	552 bp downstream
Tssr138688	transcription start site region 138688	94 bp upstream
Tssr138689	transcription start site region 138689	722 bp upstream
Tssr138690	transcription start site region 138690	780 bp upstream
Tssr138691	transcription start site region 138691	817 bp upstream