rs108404639 SNP Detail

Summary

• ID
  rs108404639
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148891173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAACTGAAC CCAGGTCCTC
  AGGAAGAATG GCCAGTGCTC TTAATCACTG AGCCATCTCT CCAGCCCCAT AACTGGACCT
  GGATAGACCC AGCACTTGGA GGGGCTGCTG AGGCAGGAGG ATTACAAGTT TAAGACAAGC
  CTAGCCATGT GGTGAGACTC TCTCTCTCTC TCCCCTCACA CACACACACA CACACACACA
  M
  AAGCAGGGAG TAGAGGAGAG AATTTTCTAT TTTTAAGAAA GAGTGCCTTC CGTGATATTT
  ATCCTTCCTA CAGCATAAAG CAGTTTGCAG TCCTGTGGTA CACTTTGTGC CCTGTCACTG
  TCAGACAGTG ACTCAGCAGA GCAGCTCAGG CCACGGTCTG CAGGCTGAGC AGAGTCTCTG
  GCTCCTGCTT CCGTCTGCCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss144698482	ENSMUSSNP3533523	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108404639					SNP	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148891173 () rs orientation: forward

Symbol	Name	Function Class
1810059H22Rik	RIKEN cDNA 1810059H22 gene	within coordinates
Gm15406	predicted gene 15406	within coordinates
Gm15409	predicted gene 15409	1507 bp upstream
Gm15410	predicted gene 15410	1170 bp upstream
Gm50627	predicted gene, 50627	1167 bp upstream
Gm52833	predicted gene, 52833	1431 bp upstream
Rr625335	regulatory region 625335	1621 bp distal
Rr625336	regulatory region 625336	1706 bp distal
Rr625337	regulatory region 625337	1181 bp distal
Rr625338	regulatory region 625338	876 bp distal
Rr625339	regulatory region 625339	521 bp distal
Rr625340	regulatory region 625340	30 bp proximal
Rr625341	regulatory region 625341	349 bp proximal
Rr625342	regulatory region 625342	1807 bp proximal
Tssr54595	transcription start site region 54595	1394 bp downstream