rs108404839 SNP Detail

Summary

• ID
  rs108404839
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrY:9782990 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      T AATTTTATAA AAATAAGAAG TTAATAAGTC AGCCATGGTG
  GTACACAAAT TTAATCCCAG AACTCAGAAG TCAAGGACAG GCAGATTTCT AAATTAGAGA
  T
  CAGCCTGGTC TACAAAGTGA GTTAAATGGC AGCCAGTGCT ATAGAGAGGA ACCCTGTCTC
  GTCAACAACA ACAACAACAA CAACAACAAC AACAACAAGT A                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss134536756	ENSMUSSNP565000	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs108404839					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrY:9782990 () rs orientation: reverse

Symbol	Name	Function Class
Gm20821	predicted gene, 20821	within coordinates