rs108407674 SNP Detail

Summary

• ID
  rs108407674
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:167198277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCACCTGTG GGTCGTGACT CCCACCTGTG GGTTGTGACT
  CCCTGGAGGT TGAACAACCC TTTCACAGGG GTCATACATC AGATACCCTG CATATCTGAT
  R
  TTTACATCAT GATTTGTAAC TAACAAAACT ACCACTATAA AGTAACAATG AAAAATTTAT
  AGTTGGGGGT GGGGGCATAC ATGAAGAACT GTATTAAAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146037748	ENSMUSSNP6763438	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108407674					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:167198277 () rs orientation: forward

Symbol	Name	Function Class
Mgst3	microsomal glutathione S-transferase 3	1258 bp downstream
Rr396523	regulatory region 396523	505 bp downstream
Rr422697	regulatory region 422697	696 bp distal
Rr422698	regulatory region 422698	623 bp distal
Rr422699	regulatory region 422699	566 bp distal
Rr422700	regulatory region 422700	16 bp distal
Rr422701	regulatory region 422701	272 bp distal
Tssr14852	transcription start site region 14852	1709 bp downstream