rs108408501 SNP Detail

Summary

• ID
  rs108408501
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:55481272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TCTCTCTCTC GTCATCTTTC TCATTTCTCC CTGTCCTCTC
  TCTGTTTCTG TCTCTCTTTG TTTCTGTCTC TGTCTTTCTT TGTTTCTGTC TCTGTCTCTG
  G
  CTCTCTCTCT GTCTCTGTCT CTCTCTCTGT GTATGTGTGT GTGCGTGCAT ATGCATGTAT
  GTGATTGTAC TGTGGTTGCA TTGACCACAG AGTCTAGAAG A                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss149126935	ENSMUSSNP5105803	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs108408501					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:55481272 () rs orientation: forward

Symbol	Name	Function Class
Gm6644	predicted gene 6644	1961 bp downstream
Gm38056	predicted gene, 38056	within coordinates
Plcl1	phospholipase C-like 1	within coordinates