rs108409269 SNP Detail

Summary

• ID
  rs108409269
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:22181675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATG TGTACTCGAA CTGAGCGCTG
  A
  TTTTTCGGCC CCAGTTTCCT CCGGA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325322945	CHEV_17_22099661	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108409269					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:22181675 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8665	CpG island 8665	21 bp proximal
Gm7805	predicted gene 7805	1442 bp downstream
Rr405064	regulatory region 405064	within coordinates
Rr523003	regulatory region 523003	254 bp distal
Rr523004	regulatory region 523004	125 bp distal
Rr523005	regulatory region 523005	within coordinates
Tssr142901	transcription start site region 142901	36 bp upstream
Tssr142902	transcription start site region 142902	895 bp upstream
Zfp942	zinc finger protein 942	230 bp upstream
Zfp943	zinc finger prtoein 943	within coordinates