rs108410335 SNP Detail

Summary

• ID
  rs108410335
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41288192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTGCACA TTTCCTTTCT
  TCTCCTCAAC CTTGTTAGGT TTTTTTCTAA GTGCCCAGGG GTTGAGGGGT TTTCCTAGCC
  CCTCTCTATC CTCGATCTAT TCTGATTTGA ATCTCTCTCA GGATTTGTAA CACTTCCTCT
  CATTAGGAAA GCTTTGCTAG ACTCGCATTC CCTGTCTCTG TAAACAGGGT TTTTTTTTTT
  T
  TTGTTTTTTT AATGATTTGT TGTTTTGGGG GTCTCTCTTT TGAATGTCAG CTCCAAATGT
  CTTAGCTTCT GGGGCTACCT CACACACTGA AACGGTTGTT GAGCTATTGT ACCCGAGAGG
  AGAGGACACA GAAATGGCTC TTTAGAATAA TAATCTCAAA AGGGAGATGA GAAAGACCCC
  AGAGGACAGC CTGTGCTCCT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136353038	ENSMUSSNP941963	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs108410335					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41288192 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21612	CpG island 21612	98 bp distal
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Rr677030	regulatory region 677030	1412 bp distal
Rr677031	regulatory region 677031	252 bp distal
Tssr84498	transcription start site region 84498	490 bp downstream
Tssr84499	transcription start site region 84499	462 bp downstream
Tssr84500	transcription start site region 84500	411 bp downstream
Tssr84501	transcription start site region 84501	399 bp downstream
Tssr84502	transcription start site region 84502	2 bp upstream
Tssr84503	transcription start site region 84503	1536 bp upstream