rs108410938 SNP Detail

Summary

• ID
  rs108410938
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127430706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCTGTACCA TTTTACAGCT CCACCGGCAC TGTGTAGGGG
  CTTCAGTTTC TCTTTGCCAG CACTTGTTAT TGTCTGTCCT GTTCAGAGAA CCAAGCTGTG
  M
  CGATATACTA ATTTTGTGGC TTTGATTTCT AATGGGCTCG TTTCCATGCG CTTAATAGCC
  ATGTGTGTAT GTTCTTGAAG CAATATCTGT TCAAATCTT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147535341	ENSMUSSNP2791130	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108410938					SNP	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127430706 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12227	CpG island 12227	762 bp distal
Mrps5	mitochondrial ribosomal protein S5	Intron
Rr564563	regulatory region 564563	1703 bp distal
Rr564564	regulatory region 564564	1554 bp distal
Rr564565	regulatory region 564565	676 bp distal
Rr564566	regulatory region 564566	1205 bp distal
Rr564567	regulatory region 564567	193 bp distal
Rr564568	regulatory region 564568	1288 bp proximal
Tssr20024	transcription start site region 20024	1523 bp downstream
Tssr20025	transcription start site region 20025	1507 bp downstream
Tssr20026	transcription start site region 20026	1356 bp downstream
Tssr20027	transcription start site region 20027	1535 bp upstream
Tssr20028	transcription start site region 20028	1956 bp upstream
Zfp661	zinc finger protein 661	1692 bp upstream