rs108411000 SNP Detail

Summary

• ID
  rs108411000
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:100590236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATGTGGA GAATTGAATT
  ACTGACTATG GTGCTTTAAT TTTTCTCTTA AACTTGGGCA ATTACAGCTA TACATGTGCC
  ATTAAGCACG CCCTTAGCAA CGCCTCAAAG GTTTAAACAA GTCTTATGTT CATATTCTCT
  CATTAAATTA TTTTCTGGTT CTTCTTTGAC ACATTTTCTT TTTCAATTTG GGGATATGTT
  S
  TTGAATTTGC ATCTGTAAGG ACTACACATT TCTATTTGCT ATTGATTTCT AAATTTATTA
  CCCTGTACTC AGAGAACACA CTTCTTAATG TTTTAAACTC CTTTAACTTT TGAGGTTTTT
  AAGGTGTGGA AAATGGCCTA TTTTAATGTT CCAAATAGAT GTACTTTGTT GTTGTTCCAA
  AATATTCTGT ACTTTGTTGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss137995775	ENSMUSSNP2558162	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs108411000					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:100590236 () rs orientation: forward

Symbol	Name	Function Class
Gm48585	predicted gene, 48585	808 bp downstream
Gm48586	predicted gene, 48586	244 bp upstream
Rps6ka5	ribosomal protein S6 kinase, polypeptide 5	within coordinates