rs108411060 SNP Detail

Summary

• ID
  rs108411060
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:168431004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGAGAGG AGTGTGAATT
  CCCTGCCAGC TAGATAGGAC TTTAATCTTA ATGAATACAC AGCCCACTGA TGTGTGTGAA
  TGGCTCACAG ATTGCTAACT GTGTCTTTTC AAGGGAAACC TGTCCCTAGA ACGGACCTCT
  AAAAAACATG AACACTGGCT CTTTGACTAT TATTATCATC TCTAGCTGAA ACGTAAAAAT
  Y
  GTCACTAAAG CAAGTCCCTC CCCAAAGGTT GTCCGTGAGG ACCCTGCTGG AAGAAAGGGT
  TAATGCCACC AGGACTCTGC AACTCCCCAG CCTGGCATCA AAACCCTTCC TACGCACCAG
  GCACCAGATG CCCGCAAGCC CGCAGCCACT GAGGCATCTG GAAGCTGCCA GCAGGCTTGC
  CCCTGAGCCT GCCGCAGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148270605	ENSMUSSNP4936240	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108411060					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:168431004 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12775	CpG island 12775			594 bp proximal
Nfatc2	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2			Intron
				Noncoding-Transcript-Variant
Rr571025	regulatory region 571025			1612 bp distal
Rr571026	regulatory region 571026			within coordinates
Rr571027	regulatory region 571027			1097 bp proximal
Tssr21877	transcription start site region 21877			1357 bp upstream
Tssr27851	transcription start site region 27851			1207 bp downstream
Tssr27852	transcription start site region 27852			1231 bp downstream