rs108411509 SNP Detail

Summary

• ID
  rs108411509
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48654927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGCCAGAG GGATTTCAAG
  AACAAGACAC GTCTTAGCCA GCAGGATACT TGACTTGCAA GCATGAGGAT CTGTGATTGG
  ATACACAGGA AGCATGAGAA AAGCCAGTTA CAGTGTCACA TGCCTGTCTC CCAAGAACAG
  AGACACGAGA GGCAGAGACA GTCAGATCCC TAGGAGCACA CAGGCCGGCT TGGTCCACGG
  K
  GTGAATTTCT GCACTGTGTT AGTTATTGTT TGGTTGCTGT GAGAAAACAT CTTAACAAAA
  GCAACTCAGC AAAGGAAGGG TCCATTTTGG CTTGTAGCGT CGGGGATACA CTCCATCCTG
  GAGGGGACAC ATGGTGGCCA GAGGCAGCTG TACATTGCAT GCTCAGTCAG GAAGCTAAGA
  GATACACGCA GCCTCTGGGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398367292	MGP_WTSI_17_48487224	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108411509					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398367292	MGP_WTSI_17_48487224	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48654927 () rs orientation: forward

Symbol	Name	Function Class
Rr335233	regulatory region 335233	1727 bp distal
Rr335234	regulatory region 335234	926 bp distal
Trem2	triggering receptor expressed on myeloid cells 2	within coordinates
Tssr145093	transcription start site region 145093	1482 bp downstream
Tssr145094	transcription start site region 145094	1454 bp downstream
Tssr145095	transcription start site region 145095	1406 bp downstream
Tssr145096	transcription start site region 145096	1373 bp downstream
Tssr145097	transcription start site region 145097	368 bp downstream
Tssr145098	transcription start site region 145098	26 bp downstream
Tssr145099	transcription start site region 145099	581 bp upstream
Tssr145100	transcription start site region 145100	610 bp upstream
Tssr145101	transcription start site region 145101	647 bp upstream
Tssr145102	transcription start site region 145102	746 bp upstream
Tssr148525	transcription start site region 148525	791 bp downstream