rs108411666 SNP Detail

Summary

• ID
  rs108411666
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:180075564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCTTTGA GAACTGGCTG
  TCTGTCATAT CTTAAACACA CACCCACTAG ACCCGAGATC TCTTCCGTAT CTCTTCTGGC
  AACAGTGAAT TCTCTTCTCA CAGATATCTA GATCAGGGAT GTGCCTCGGT GGCAGAGCCT
  GCCATGCCTG AGGCCTTGGG TTTCATCCAC GGCCCCACAT CAAAGTTATC CTTAAGCCTG
  S
  GTATTCTGTT GCTGGTCTCT TCAATGCTGG GCTAGAGTAG ACTATTATCT TATCTGTTGT
  GGTAAGTACA CAGTTCAAGA GTTTATTCTG GCTCTCGCCT CATTGTACAG GCACATCACG
  GTGGGAGGAG CTTGAAGCAG CTGTCAGTCA CATCTCATTG ACAGACAGTC AGGGAGCAGG
  GACCGAGGAA TGGATGTAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146378745	ENSMUSSNP4775662	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108411666					SNP	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180075564 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Psen2	presenilin 2			Intron
				Noncoding-Transcript-Variant
Rr372537	regulatory region 372537			1869 bp upstream
Rr424422	regulatory region 424422			1904 bp distal
Rr424423	regulatory region 424423			within coordinates
Rr424424	regulatory region 424424			141 bp proximal
Rr424425	regulatory region 424425			876 bp proximal
Rr424426	regulatory region 424426			1755 bp proximal