rs108412947 SNP Detail

Summary

• ID
  rs108412947
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:100821093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATAC TTTTCCATAC TTTCCTAGGT
  Y
  ATCAACTGTC TTTTCCAGCC AGAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148928133	ENSMUSSNP3274326	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321627410	CHEV_5_101102246	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs108412947					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:100821093 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Coq2	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase			Intron
				Noncoding-Transcript-Variant
Cpgi16113	CpG island 16113			480 bp proximal
Gm15777	predicted gene 15777			within coordinates
Rr615537	regulatory region 615537			1512 bp distal
Rr615538	regulatory region 615538			1618 bp distal
Rr615539	regulatory region 615539			517 bp distal
Rr615540	regulatory region 615540			196 bp proximal
Rr615541	regulatory region 615541			1027 bp proximal
Rr615542	regulatory region 615542			1047 bp proximal
Rr615543	regulatory region 615543			1907 bp proximal
Rr615544	regulatory region 615544			1969 bp proximal
Tssr52113	transcription start site region 52113			1003 bp downstream