rs108416524 SNP Detail

Summary

• ID
  rs108416524
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47819761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAATTCCCA GCAACTCACA
  GTTGTCCATT TGTCACTGCA GTTCAGGGGA TTTGATGCCC TTTCCTTCCT TCCTTCCTTC
  CTTCCTTCCT TCTTTCCTTT CTTTCTTAAA TATATATATT TTAAAGATCT ATTTATTGTT
  ATATGTAAGT ACACTGTAGC TATCTCCAGT CACACCAGAA AAGGGCATTA GCTCTCATTA
  Y
  AGATGGTTGT GAGCCACCAT GTGGTTGCTG GGATTTGAAC TCAGGACCTT CAGAAGAGGA
  GTCAGTGCTC TTAACCACTG AGCCTTCTCT TCAGCCCTGA GACCCTTTTT TTTTTTTTTT
  TTTTTTTTTG AGACAGGGTT TCTCTGTGTA GCCCTGGCTG TCCTGGAACT CACTTTGTAG
  ACCAGGCTGG CCTCGAACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398348178	MGP_WTSI_17_47645785	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	C	T	T	T	C	T	C	C	C	T	T	T	C	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108416524					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	C	T	T	T	C	T	C	C	C	T	T	T	C	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398348178	MGP_WTSI_17_47645785	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47819761 () rs orientation: forward

Symbol	Name	Function Class
Ccnd3	cyclin D3	within coordinates
Rr370267	regulatory region 370267	571 bp downstream
Rr528025	regulatory region 528025	134 bp distal
Rr528026	regulatory region 528026	252 bp proximal
Rr528027	regulatory region 528027	1764 bp proximal
Tssr5140	transcription start site region 5140	640 bp upstream
Tssr144927	transcription start site region 144927	530 bp downstream
Tssr144928	transcription start site region 144928	357 bp upstream
Tssr144929	transcription start site region 144929	506 bp upstream
Tssr144930	transcription start site region 144930	584 bp upstream
Tssr144931	transcription start site region 144931	612 bp upstream
Tssr144932	transcription start site region 144932	681 bp upstream
Tssr144933	transcription start site region 144933	727 bp upstream
Tssr144934	transcription start site region 144934	793 bp upstream
Tssr144935	transcription start site region 144935	1793 bp upstream
Tssr148442	transcription start site region 148442	830 bp upstream
Tssr148443	transcription start site region 148443	664 bp downstream