rs108417552 SNP Detail

Summary

• ID
  rs108417552
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:122266542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATCCACGT GTAGGAAGGA
  GAGAACGGAT TCCTGTGAGT TTGTCCTCTG ACCCCCATGC ACGAGCCTTG TACATACACA
  CAAGGACTAA ATAAAAATGT CATTAAGAAA TAAAAAGATG GGGCTGGTGA CATGGCTCAG
  CGGTTAAGAG CACTGACTGC TCTTCCAGAG GTCCTGAGTT CAATTCCCAG CAACCACATG
  R
  TGGCTCACAA CCACCTGTAA TAAGATCTGA AGACAGCTAC AGTGTACTTA CATATAATAA
  ATAAATAAAA TCTTAAAAAA TAAATAAATA AAAAGACGGC TGAGCATGGT TGGTTGCACA
  CGCCTTTAAT CCCAGCACTT GGGAGGCAGA GGCAGGCAGA TTTCTGAGTT CGAGGACAGC
  CTGGTCTACA GAGTGAGTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss149186724	ENSMUSSNP2733341	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss321668873	CHEV_5_122578488	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs108417552					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122266542 () rs orientation: forward

Symbol	Name	Function Class
Ccdc63	coiled-coil domain containing 63	Intron
Cpgi16543	CpG island 16543	1207 bp proximal
Rr619772	regulatory region 619772	1866 bp distal
Rr619773	regulatory region 619773	398 bp proximal
Rr619774	regulatory region 619774	693 bp proximal
Rr619775	regulatory region 619775	1611 bp proximal
Tssr53079	transcription start site region 53079	1927 bp downstream