rs108419698 SNP Detail

Summary

• ID
  rs108419698
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:9616758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G AGGAAAATGA GCCAGAAAGG CAAGAGGAAA GGGGGCCGGC
  AAGGACCTTC GGGCAAGAGA AAGGGCGGCC CGCCGGGTCA GGGAGAAAAG AGGAAAGGAG
  G
  CTTGGGAAGC AAAAAGCATT CCTGGCCTTC TGCTTTAGCT GGCAAGAAGA AAGGAGTGCC
  GCCCCAAGGT GGGAAGAGGA GGAAGTAGCG TTCTCCCCTC G                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MSM/Ms
ss148565762	ENSMUSSNP2407539	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	MSM/Ms
rs108419698					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:9616758 () rs orientation: forward

Symbol	Name	Function Class
Adhfe1	alcohol dehydrogenase, iron containing, 1	1415 bp upstream
Cpgi23	CpG island 23	294 bp distal
Rr395961	regulatory region 395961	1137 bp downstream
Rr407596	regulatory region 407596	1335 bp distal
Rr407597	regulatory region 407597	1115 bp distal
Rr407598	regulatory region 407598	1179 bp distal
Rr407599	regulatory region 407599	951 bp distal
Rr407600	regulatory region 407600	within coordinates
Rr407601	regulatory region 407601	373 bp distal
Rr407602	regulatory region 407602	988 bp proximal
Rr407603	regulatory region 407603	1426 bp proximal
Rrs1	ribosome biogenesis regulator 1	Coding-NonSynonymous
Tssr5894	transcription start site region 5894	1145 bp downstream
Tssr5895	transcription start site region 5895	1054 bp downstream
Tssr5896	transcription start site region 5896	1038 bp downstream
Tssr5897	transcription start site region 5897	545 bp downstream
Tssr5898	transcription start site region 5898	1516 bp upstream
Tssr5899	transcription start site region 5899	1581 bp upstream