rs108420029 SNP Detail

Summary

• ID
  rs108420029
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:30066204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAGGGAAC TGGAATTCAG
  CCAGTCTAAC TTACATTCTC AGAGCCTTCT TGGCCACAAT ACTGATTTGT TTTTTATTTG
  TGTTTTAAAC CTTGTGTATG CACAGTACTG ATTTAGGAGG AGACAGGAGT CTTGATAGTG
  GCTCTAGGTA GCACAGATTC TAAGGAAACT GAAGAGCAAT TGATTGCACT CCCATCCCCC
  C
  TCCCCTTGGT ACTGTCCGAC TCTTTACAAC ACGCCTGTGT GATTTTTTTT TTTAAGGATA
  AAAAGCCAAC ATGATGACCC TGCATGCAAT TGCATGACAT CACAGGGTTT GGAAAGCCAA
  GGTTCTGGAT GCTTTTAAAA ATGTGGGTCT TGTTTGAAGT CAGAGCCCTT ACTTAATAAG
  CGAGGCACTA ACTTGACAGG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325355144	CHEV_17_29984175	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108420029					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:30066204 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8930	CpG island 8930	1920 bp proximal
Gm56908	predicted gene, 56908	within coordinates
Mdga1	MAM domain containing glycosylphosphatidylinositol anchor 1	within coordinates
Rr330462	regulatory region 330462	604 bp distal
Rr330463	regulatory region 330463	1197 bp proximal
Rr341132	regulatory region 341132	404 bp distal
Rr341133	regulatory region 341133	1538 bp proximal
Rr392501	regulatory region 392501	within coordinates
Rr392502	regulatory region 392502	1553 bp upstream
Tssr143596	transcription start site region 143596	695 bp downstream
Tssr143597	transcription start site region 143597	672 bp downstream
Tssr143598	transcription start site region 143598	990 bp upstream