rs108422861 SNP Detail

Summary

• ID
  rs108422861
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:20972515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGTA CAGGCTCTCC TTCACGAGGC
  W
  ATTTTCTGAT CCCTCTGCCT CTCTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss137287055	ENSMUSSNP5776106	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108422861					SNP	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:20972515 () rs orientation: forward

Symbol	Name	Function Class
3110053B16Rik	RIKEN cDNA 3110053B16 gene	1252 bp upstream
Cpgi4472	CpG island 4472	990 bp distal
Rr463638	regulatory region 463638	1470 bp distal
Rr463639	regulatory region 463639	762 bp distal
Rr463640	regulatory region 463640	1024 bp distal
Rr463641	regulatory region 463641	977 bp distal
Tssr115849	transcription start site region 115849	1431 bp upstream
Tssr115850	transcription start site region 115850	1278 bp upstream
Tssr115851	transcription start site region 115851	1241 bp upstream