CCCCCACACC ATCCTCAATC TGCAGAGGAT AGGAGAGCAT GAGGGAGGGG AAAAGGTCCC CAAGATAAAG GAGGCTAAGA AGGGGAGGAG CTCAGAATGG GTGGCCTGGT TCAGCAAGGT GAGTGACTGG TAGGGGCACT AAGAGGTGGG ATGGGCTCTG GAGTGATGAT GGGGCGTGGT CGGGGGGCGG GGGAGGGAGC R GGGAGAGGCT GCCATTCTAA GCTCTCATTC CAAGGGGTGA GAAAGTACCA CTACGCGCGT GAGGGAGTGG GCCAGAGAAA TCTTCTTATC GCCATCCTGG ACCCCAAAAA TCACGAAGGC TGTCCCGTCC ACGTTTTTCC CGTACAGGAA CCTGAGAGAC AAGGAGACTT GGGGTCCTGG AGACTTCTCT GGGTGTGGCT R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss130940636 | NCBIM37_NT_039649_chr17_57364018 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | G | A | A | A | A | A | A | A | A | A | A | A | A | A | G | A | A | A | A | A | A | A | A | A | A | A | A | A | A | G | A | A | A | A |
SNP Consensus Information | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
rs108422972 | SNP | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | G | A | A | A | A | A | A | A | A | A | A | A | A | A | G | A | A | A | A | A | A | A | A | A | A | A | A | A | A | G | A | A | A | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss130940636 | NCBIM37_NT_039649_chr17_57364018 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | A/G |
Location: Chr17:57531595 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
C3 | complement component 3 | Intron | ||||||
Cpgi9399 | CpG island 9399 | within coordinates | ||||||
Tssr145378 | transcription start site region 145378 | 1460 bp downstream | ||||||
Tssr145379 | transcription start site region 145379 | 1385 bp downstream | ||||||
Tssr145380 | transcription start site region 145380 | 1340 bp downstream | ||||||
Tssr145381 | transcription start site region 145381 | 1286 bp downstream | ||||||
Tssr145382 | transcription start site region 145382 | 732 bp downstream | ||||||
Tssr145383 | transcription start site region 145383 | 655 bp downstream | ||||||
Tssr145384 | transcription start site region 145384 | 485 bp downstream | ||||||
Tssr145385 | transcription start site region 145385 | 654 bp upstream | ||||||
Tssr145386 | transcription start site region 145386 | 1430 bp upstream | ||||||
Tssr145387 | transcription start site region 145387 | 1661 bp upstream | ||||||
Tssr148942 | transcription start site region 148942 | 1749 bp upstream | ||||||
Tssr148943 | transcription start site region 148943 | 1709 bp upstream | ||||||
Tssr148944 | transcription start site region 148944 | 1695 bp upstream | ||||||
Tssr148945 | transcription start site region 148945 | 1658 bp upstream | ||||||
Tssr148946 | transcription start site region 148946 | 1646 bp upstream | ||||||
Tssr148947 | transcription start site region 148947 | 1396 bp upstream | ||||||
Tssr148948 | transcription start site region 148948 | 1312 bp upstream | ||||||
Tssr148949 | transcription start site region 148949 | 1256 bp upstream | ||||||
Tssr148950 | transcription start site region 148950 | 702 bp upstream | ||||||
Tssr148951 | transcription start site region 148951 | 673 bp upstream | ||||||
Tssr148952 | transcription start site region 148952 | 613 bp upstream | ||||||
Tssr148953 | transcription start site region 148953 | 432 bp upstream | ||||||
Tssr148954 | transcription start site region 148954 | 407 bp upstream | ||||||
Tssr148955 | transcription start site region 148955 | 262 bp upstream | ||||||
Tssr148956 | transcription start site region 148956 | 229 bp upstream | ||||||
Tssr148957 | transcription start site region 148957 | 285 bp downstream | ||||||
Tssr148958 | transcription start site region 148958 | 508 bp downstream | ||||||
Tssr148959 | transcription start site region 148959 | 668 bp downstream | ||||||
Tssr148960 | transcription start site region 148960 | 1422 bp downstream | ||||||
Tssr148961 | transcription start site region 148961 | 1459 bp downstream | ||||||
Tssr148962 | transcription start site region 148962 | 1605 bp downstream | ||||||
Tssr148963 | transcription start site region 148963 | 1657 bp downstream | ||||||
Tssr148964 | transcription start site region 148964 | 1690 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 07/22/2025 MGI 6.24 |
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