rs108426364 SNP Detail

Summary

• ID
  rs108426364
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3072119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CAAAACTACA ACACATAAAA AAAAAATTTT CTTTCTTTTT
  GTCTGCCTTT CTTTTTTCTC TCTCTTTCTT TCTTTCTTTC TTTCTTTCTT TCTTTCTTTC
  T
  TTCTTTCTCT CTCCTGCAGA ACCCCTCAGG TTCAGCCCTA GTACTTGTAA GGGAAACAGC
  CTCGAACTCA GAAACCTGCC TGCCTCTGCC TCTACCACTG C                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss131630077	ENSMUSSNP5954538	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs108426364					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3072119 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2431	CpG island 2431	1145 bp proximal
Gm74511	predicted gene, 74511	within coordinates
Rr369110	regulatory region 369110	1702 bp upstream
Rr402381	regulatory region 402381	894 bp downstream
Rr441449	regulatory region 441449	30 bp proximal
Rr441450	regulatory region 441450	800 bp proximal
Rr441451	regulatory region 441451	1207 bp proximal
Rr441452	regulatory region 441452	1366 bp proximal
Rr441453	regulatory region 441453	1913 bp proximal
Tssr100004	transcription start site region 100004	1880 bp upstream
Tssr100005	transcription start site region 100005	1924 bp upstream
Tssr106442	transcription start site region 106442	1786 bp downstream