rs108427817 SNP Detail

Summary

• ID
  rs108427817
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150532588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTTGTAC CTGGGTCAGT
  TTTTTCTAGG CCAGTCTACA GTCTACAGAA GTGTAGCTGT ATTCCTACAT GCAGGTGCTT
  CCTGCCCCTC TAGAGAGAAC TGCCATGTTT TGTGTAGTTG TCCAGGAATG ATTACACATT
  ACCTCTTGAT AGATGCTTTA TTCTCTTAAA GATTGATTTT TAAAATATTT ATATGTTTTT
  R
  CTTGCATGTA TGCTTATGTA CCATGTGAGT ACCTGGTCAG AGAAGTCAGA GAAGCTGGAA
  TTAAAGATGG TTGTGAGCCA TCCTGTGGAT GCTGGGAATT GAACCTGGAT GCTTTGTAAG
  AACAGCCAGT GGTCCTAAAG GCTGCTATCT TTTTAGCCCC TCTTTCTCCC TTTTTGGAAT
  CAAAATTTCA CAATACAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148053421	ENSMUSSNP2872259	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108427817					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150532588 () rs orientation: forward

Symbol	Name	Function Class
Gm52709	predicted gene, 52709	within coordinates
Rere	arginine glutamic acid dipeptide (RE) repeats	Intron
Rr377422	regulatory region 377422	636 bp downstream
Rr605301	regulatory region 605301	1048 bp distal
Rr605302	regulatory region 605302	279 bp distal