rs108428622 SNP Detail

Summary

• ID
  rs108428622
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:32305840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGACCTGGG AACTTGAACT
  TCAAATAAGC ACTCCTGGTG GTCAGCTGGC ATGCTGAGTC CAGGGAAACA CTAATAAGAA
  AGAAGCCTGT AATATACAGA GCCACCTAGG GCAGTTTTCA GGTCTTGTCA TTCCTAACCC
  TTCAGCCTGC TTCTTTCAGC TACCTGTACC CACACTCCTT CATGCCCCCC GGGGGGGGGC
  A
  GGGGGGGCAG GGCTTCAACT CCAAATCTTA ATCACCTAGC ACTTTCCTCT GGCGCACTCC
  CAGGGCTATG AGATTCCTGT GCTTCTCCAC AGGACTTAAG AGGACTACCT GTCCTCTAAG
  AAGGTTTTCT CACACTACCA AGAGGAGACC CTGTCACTCC AACCTTGCTC CTGTGCCCCC
  CTCATGCTCC TGCATTCCTG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133098899	ENSMUSSNP2198673	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108428622					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:32305840 () rs orientation: forward

Symbol	Name	Function Class
Plxna4	plexin A4	Intron
Rr628093	regulatory region 628093	1371 bp distal
Rr628094	regulatory region 628094	322 bp distal
Rr628095	regulatory region 628095	604 bp distal