rs108429360 SNP Detail

Summary

• ID
  rs108429360
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88185542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TGCTACGGTT GAAGGCCTTT GTTCTCTTTG GGAAGCTTAC
  AAAAGTGGTT GGGATTTCCA AGAAGCATTT CTTCAAAGGG GAGGTGAAGA GAGGCTGGGT
  C
  TCCCTCCTGC TGCACTGCCA GGACCCCTGC CCCAGCGTGG CCCAGGTAAC ACGCCCCTCC
  CTCCCCATAT CCTATGATCT GGGACCACAG TGCCAAAAGG A                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss144898732	ENSMUSSNP6350614	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108429360					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88185542 () rs orientation: forward

Symbol	Name	Function Class
Mroh2a	maestro heat-like repeat family member 2A	within coordinates
Rr18061	regulatory region 18061	1059 bp proximal
Rr35066	regulatory region 35066	within coordinates
Tssr7958	transcription start site region 7958	1290 bp upstream
Tssr7959	transcription start site region 7959	1312 bp upstream
Tssr7960	transcription start site region 7960	1327 bp upstream
Tssr7961	transcription start site region 7961	1374 bp upstream
Tssr7962	transcription start site region 7962	1528 bp upstream
Tssr7963	transcription start site region 7963	1556 bp upstream
Tssr7964	transcription start site region 7964	1571 bp upstream
Tssr7965	transcription start site region 7965	1607 bp upstream