rs108429892 SNP Detail

Summary

• ID
  rs108429892
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:135286030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAAT AATAAAAAAC TAATAAAACC
  Y
  CAGAAATGTT TTAATAAATC CACCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133802826	ENSMUSSNP3995881	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss321986312	CHEV_6_135259050	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs108429892					SNP	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:135286030 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18093	CpG island 18093	899 bp proximal
Gm36640	predicted gene, 36640	within coordinates
Pbp2	phosphatidylethanolamine binding protein 2	97 bp downstream
Tssr63760	transcription start site region 63760	1317 bp downstream
Tssr63761	transcription start site region 63761	1342 bp downstream