rs108434240 SNP Detail

Summary

• ID
  rs108434240
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127030120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GTTCCAGGAC AGCCAGGGCT ACACAGAGAA ACCCTGTCTC
  AAAAAAAAAA AAAAAAAAGA AAAGAAAAGA AAAGAAAAAA AACAGGAGGA GGAGGAGGAG
  T
  AGGAGGAGGA GGAGGAAGGA AAACTATTCC CCAACCCCAA AGCCCCAACT CAGGAGCCCT
  TGAAATGGCC AGGAACCTGG GGTAGGGGTA CTGGAAATGG G                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147729421	ENSMUSSNP4069711	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs108434240					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127030120 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2345	CpG island 2345	880 bp proximal
Dtx3	deltex 3, E3 ubiquitin ligase	within coordinates
F420014N23Rik	RIKEN cDNA F420014N23 gene	998 bp upstream
Gm57007	predicted gene, 57007	within coordinates
Rr224404	regulatory region 224404	80 bp proximal
Tssr96170	transcription start site region 96170	989 bp upstream
Tssr99735	transcription start site region 99735	1091 bp upstream
Tssr99736	transcription start site region 99736	947 bp downstream
Tssr99737	transcription start site region 99737	1462 bp downstream