rs108434474 SNP Detail

Summary

• ID
  rs108434474
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132460918 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

             AAATGGTTGT AGCTGACCGA GTTATAGACG TAATAACGTT GCAGGATGTG
  Y
  GGCTCACTGG CAATGCGGGT CAGCGCCGTG TGCATGGAGC TGACGCTGGC           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321335979	CHEV_4_132289522	CHEVERUD	SCREENING_POP	r	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108434474					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132460918 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi14969	CpG island 14969	974 bp distal
Cpgi14970	CpG island 14970	within coordinates
Gm69628	predicted gene, 69628	1373 bp upstream
Rr398540	regulatory region 398540	750 bp downstream
Rr601049	regulatory region 601049	1152 bp distal
Rr601050	regulatory region 601050	1067 bp distal
Rr601051	regulatory region 601051	660 bp distal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	within coordinates
Tssr39417	transcription start site region 39417	1764 bp downstream
Tssr43695	transcription start site region 43695	1886 bp upstream
Tssr43696	transcription start site region 43696	1169 bp upstream
Tssr43697	transcription start site region 43697	1049 bp upstream
Tssr43698	transcription start site region 43698	1021 bp upstream
Tssr43699	transcription start site region 43699	1218 bp downstream
Tssr43700	transcription start site region 43700	1230 bp downstream
Xkr8	X-linked Kx blood group related 8	1061 bp upstream