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rs108435006 SNP Detail
Summary
  • ID
    rs108435006
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr17:48041263 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACTCAAGGGC AGACCTTCTC
CCTGCAGTAC GGCACCGGCA GCCTTACCGG CTTCTTCGGC TATGACACTC TGAGAGTGAG
TCAAATTCCC TACTCCTGGG TGGGGCATGG GAGGAAGATG AGGGCCTTAG GCGAAGCCCC
CGAGACGAGA TGAAACGCTG TTTGTAGGAC GGGTGTCAGC ACAGTGAGAC CTCGTTCATT
Y
ACCCGCTGAC CCTCATTATG TGTCAGGGAA GCCATGAAGG ACCCTTTGGT TGTAGCCATT
TTCCTTCAGG AGCATAAGCT CTGCTGAGTT GAGAGGGGCA GGGCAGGGGC AGGGCAGGGG
CAGGGACAAC ACCATAAGTG CTGATCCTTG AAAAAGAATA TGTCTCCTGC CAGACTCATC
AAGGTGGGGT GGGGACTTGA                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss398352968 MGP_WTSI_17_47867287 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs108435006 SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss398352968 MGP_WTSI_17_47867287 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:48041263 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Pgc progastricsin (pepsinogen C) Intron
Rr528106 regulatory region 528106 371 bp proximal
Tssr5147 transcription start site region 5147 1587 bp downstream
Tssr5148 transcription start site region 5148 1025 bp upstream
Tssr5149 transcription start site region 5149 1145 bp upstream
Tssr145004 transcription start site region 145004 1596 bp downstream
Tssr145005 transcription start site region 145005 1575 bp downstream
Tssr145006 transcription start site region 145006 1546 bp downstream
Tssr145007 transcription start site region 145007 1514 bp downstream
Tssr145008 transcription start site region 145008 1493 bp downstream
Tssr145009 transcription start site region 145009 1465 bp downstream
Tssr145010 transcription start site region 145010 1083 bp downstream
Tssr145011 transcription start site region 145011 1064 bp downstream
Tssr145012 transcription start site region 145012 1047 bp downstream
Tssr145013 transcription start site region 145013 995 bp downstream
Tssr145014 transcription start site region 145014 201 bp downstream
Tssr145015 transcription start site region 145015 186 bp downstream
Tssr145016 transcription start site region 145016 182 bp downstream
Tssr145017 transcription start site region 145017 260 bp upstream
Tssr145018 transcription start site region 145018 272 bp upstream
Tssr145019 transcription start site region 145019 303 bp upstream
Tssr145020 transcription start site region 145020 324 bp upstream
Tssr145021 transcription start site region 145021 350 bp upstream
Tssr145022 transcription start site region 145022 382 bp upstream
Tssr145023 transcription start site region 145023 409 bp upstream
Tssr145024 transcription start site region 145024 520 bp upstream
Tssr145025 transcription start site region 145025 864 bp upstream
Tssr145026 transcription start site region 145026 1120 bp upstream
Tssr148459 transcription start site region 148459 1537 bp upstream
Tssr148460 transcription start site region 148460 1485 bp upstream
Tssr148461 transcription start site region 148461 1473 bp upstream
Tssr148462 transcription start site region 148462 1430 bp upstream
Tssr148463 transcription start site region 148463 1057 bp upstream
Tssr148464 transcription start site region 148464 972 bp upstream
Tssr148465 transcription start site region 148465 211 bp upstream
Tssr148466 transcription start site region 148466 177 bp upstream
Tssr148467 transcription start site region 148467 291 bp downstream
Tssr148468 transcription start site region 148468 322 bp downstream
Tssr148469 transcription start site region 148469 412 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory