rs108437571 SNP Detail

Summary

• ID
  rs108437571
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26729704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCAGAGAG TGTTAGCAAA
  GGTATAGCCG CCGCAGGTCA CAATCCAGGT AGTGAGGATG CCTTGGTTTC TGGGGCAGAA
  CCAGAGAGGC TGCTGCTGCA TTGGAGGCTT AGCTGCTGAG GGCCGGGGAC AGTGTGAGGC
  AGTAGATTTC AACTCTAGGA GAGGCCTCCC TGACCTGAGA GCCTCCCCAT TCCAGGTGTG
  Y
  TTAGAAGCAA CAAGCAACGT TAGAGGCCAC AGGGGGTGAT AAGAATCAGC CAAAAGACTT
  AGCCTGCCTC TCCCCTTTAA CTGTGTGGCC TCTCCTCATT CACTTTACCA TGCCACAGCT
  CCCTGTGACT GGGCGAGAAG CAGCAGCTTC TATACGGGAC CTGTGGGGAC AGTCGGTGTG
  CAGGCTTGGC ACCAGCCTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss130692765	NCBIM37_NT_039649_chr17_26647675	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108437571					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss130692765	NCBIM37_NT_039649_chr17_26647675	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26729704 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8811	CpG island 8811	1707 bp distal
Gm56886	predicted gene, 56886	737 bp downstream
Rr339410	regulatory region 339410	903 bp distal
Rr392454	regulatory region 392454	161 bp upstream
Rr405112	regulatory region 405112	1997 bp downstream
Rr405113	regulatory region 405113	1625 bp downstream
Rr406958	regulatory region 406958	40 bp distal
Tssr5044	transcription start site region 5044	1766 bp downstream
Tssr5045	transcription start site region 5045	1262 bp upstream
Tssr5046	transcription start site region 5046	1209 bp upstream
Tssr5047	transcription start site region 5047	1198 bp upstream
Tssr143233	transcription start site region 143233	1999 bp downstream
Tssr143234	transcription start site region 143234	1956 bp downstream
Tssr143235	transcription start site region 143235	1022 bp downstream
Tssr143236	transcription start site region 143236	989 bp downstream
Tssr143237	transcription start site region 143237	1997 bp upstream
Tssr146955	transcription start site region 146955	1848 bp upstream
Tssr146956	transcription start site region 146956	1231 bp upstream
Tssr146957	transcription start site region 146957	1161 bp upstream