rs108437687 SNP Detail

Summary

• ID
  rs108437687
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:66371590 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCAA ACTGTACTTG ATGTGTTTAT
  R
  AAAAGACGGG GGGGGGGGGA TAGTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss148586908	ENSMUSSNP842384	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321563112	CHEV_5_66605486	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs108437687					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:66371590 () rs orientation: forward

Symbol	Name	Function Class
Gm3822	predicted gene 3822	500 bp upstream
Gm73278	predicted gene, 73278	379 bp upstream
Gm73415	predicted gene, 73415	within coordinates
Rr378070	regulatory region 378070	within coordinates
Rr612424	regulatory region 612424	1356 bp proximal
Tssr46528	transcription start site region 46528	1512 bp upstream
Tssr51198	transcription start site region 51198	297 bp downstream