rs108437979 SNP Detail

Summary

• ID
  rs108437979
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:180075484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAGCTTCA AAGGTCACCT
  TGCCCTGACA TATGGGGGAA TTCTTGCCAA GCAGGGGTCT GCAAGACTAT AAGGTCCCCT
  TCCTCTTTGA GAACTGGCTG TCTGTCATAT CTTAAACACA CACCCACTAG ACCCGAGATC
  TCTTCCGTAT CTCTTCTGGC AACAGTGAAT TCTCTTCTCA CAGATATCTA GATCAGGGAT
  R
  TGCCTCGGTG GCAGAGCCTG CCATGCCTGA GGCCTTGGGT TTCATCCACG GCCCCACATC
  AAAGTTATCC TTAAGCCTGG GTATTCTGTT GCTGGTCTCT TCAATGCTGG GCTAGAGTAG
  ACTATTATCT TATCTGTTGT GGTAAGTACA CAGTTCAAGA GTTTATTCTG GCTCTCGCCT
  CATTGTACAG GCACATCACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss146378727	ENSMUSSNP5919025	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs108437979					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180075484 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Psen2	presenilin 2			Intron
				Noncoding-Transcript-Variant
Rr372537	regulatory region 372537			1949 bp upstream
Rr424422	regulatory region 424422			1824 bp distal
Rr424423	regulatory region 424423			within coordinates
Rr424424	regulatory region 424424			221 bp proximal
Rr424425	regulatory region 424425			956 bp proximal
Rr424426	regulatory region 424426			1835 bp proximal
Tssr15531	transcription start site region 15531			1964 bp upstream