rs108439496 SNP Detail

Summary

• ID
  rs108439496
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:33957309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGACACGTG ACTCAGAGGT
  GTGGCTTCCA GCTCAACCTA GGATAGCAGC CCGGCCTTCT GTGGTATGTC TCCACTGCCC
  TCTAGTGTTT AGCATCATGG TGGCCACGCT ATGGCCACTC ACTAGAATGG CTGTTACCTC
  AGAGCAAGTG GGGAAGGTTA GATCTAGAGC CAGCAGGCCA CAAAAGCCAA TATCCGGGGT
  R
  GCCCTTCCCA AGCACCACCT CTTCCTCTCT GATTGCTACA CCTGATCAAG CACTATATAA
  TCTATAGGCG CATACCATCT AAATATCTGT GATGTACAAT GTACAGCATT ACACATTAGC
  TAAGGAATGA GAAAAGGTGT ATGCTAGTTT GTTTGCCCTC TTCATACTGT CCTTTGAGCA
  TGACTCTTCT TGTGTGTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss139267605	ENSMUSSNP296035	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108439496					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:33957309 () rs orientation: forward

Symbol	Name	Function Class
Rr490523	regulatory region 490523	within coordinates
Rr490524	regulatory region 490524	108 bp distal
Shld2	shieldin complex subunit 2	1681 bp downstream