rs108440561 SNP Detail

Summary

• ID
  rs108440561
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:45860624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCTCTCTG CTCCCCACCC
  CCCGCCGGGG GGAGGGGGCC TAGAAAGGGC ACGGGGGAGG CTGGAGATGG GGGGATGGGT
  GGGAGGGCGG ACTGAAGGGG CCGGGCTGGG GGGGCCGGGG CCGGGGGCGG GTGTCACCTT
  GAGGCCCTCG CGGCGCCGCT CCGCCTCCCG CCCGCTCCCG CCGCCGCCTT TTGTCTGAGC
  S
  GAGCTGGAGC CAGCGCGCCC CCCCTCTTCC TCCCAGTGCA TCAGAGCCCC GCCCCCAGCC
  CCCCAAACTC CGCCTCCCCC AAGCCTTCCT AATAACCACC ACCACCACAC CGCTAAAGGG
  GAGAAGCAAC AGGGGCTCCC CGCACCCTTT CTGTCTCTCG GCCCTGTTCA CCGCATCTTC
  CTTCCGCCTG CCCCTTCTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398302096	MGP_WTSI_17_45686647	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	G	C	C	C	C	C	G	C	C	G	C	C	C	C	C	G	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108440561					SNP	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	G	C	C	C	C	C	G	C	C	G	C	C	C	C	C	G	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398302096	MGP_WTSI_17_45686647	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:45860624 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9192	CpG island 9192	within coordinates
Rr527421	regulatory region 527421	32 bp distal
Rr527422	regulatory region 527422	1632 bp distal
Rr527423	regulatory region 527423	848 bp distal
Rr527424	regulatory region 527424	within coordinates
Rr527425	regulatory region 527425	1264 bp proximal
Tmem151b	transmembrane protein 151B	21 bp upstream
Tssr148206	transcription start site region 148206	115 bp upstream
Tssr148207	transcription start site region 148207	30 bp upstream
Tssr148208	transcription start site region 148208	within coordinates