rs108441254 SNP Detail

Summary

• ID
  rs108441254
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:85922043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTCCGGGG TACCGGGTGA
  GGCGTCACAA GGGATCTACT AACCTGGAAC CCCAAGCCAG AAAGCCCCCA TGGTAGGGTG
  CAAGTACCCT GCCACCCCGC CCCCAACACC CGAGCCACCG TTGGCGGGAG GAGCCCAGAG
  AACTCGGACC CGCCTAGGGG GAAAGAGGGA GGGGAAAGGG AAGGGGTCGG GGAGGAGCTG
  W
  TGATTTACAC GGAATTCTTT AAACAGACTT ACCCAGCCAC CTGTTGAGAA TCAGTCTGGG
  GTCGGCCAGC TCCGGATCTG CTCGAGGTGG ACACACAAAA GCAAAAGCCA AGCTGGGAAA
  GTAAATTTCT TTGGCTATGC CAGACGCGGC AAGCTAGGCT AACAACCTTG CGCTAGGGTA
  GCAAGGCTGT AAGATCCAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325486758	CHEV_17_86013955	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108441254					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:85922043 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9587	CpG island 9587	1543 bp distal
Cpgi9588	CpG island 9588	536 bp distal
Cpgi9589	CpG island 9589	64 bp proximal
Cpgi9590	CpG island 9590	1964 bp proximal
Gm55782	predicted gene, 55782	1011 bp downstream
Gm55783	predicted gene, 55783	47 bp upstream
Gm55784	predicted gene, 55784	345 bp upstream
Rr340291	regulatory region 340291	within coordinates
Six3	sine oculis-related homeobox 3	within coordinates
Six3os1	SIX homeobox 3, opposite strand 1	within coordinates
Tssr146084	transcription start site region 146084	1377 bp downstream
Tssr146085	transcription start site region 146085	1130 bp downstream
Tssr149706	transcription start site region 149706	1551 bp upstream
Tssr149707	transcription start site region 149707	187 bp downstream
Tssr149708	transcription start site region 149708	385 bp downstream
Tssr149709	transcription start site region 149709	432 bp downstream
Tssr149710	transcription start site region 149710	521 bp downstream
Tssr149711	transcription start site region 149711	549 bp downstream
Tssr149712	transcription start site region 149712	839 bp downstream