rs108443101 SNP Detail

Summary

• ID
  rs108443101
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:88274911 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGTACAAG GAAAGAGTCT
  GGTGCAGGTG TAGCAACTCC GGATTGGCCC GGCTGTGGTT GCTGGGGAGA TTTTCTGACT
  CTTTCTCAGC AACCAATATC ACAAACACCT GGCAATGGGC TTCATCAGTG GGCACACACA
  TGGGTTCAAG GAACGGTCAA AACATTGGCA GACACACGCG TTCAAGAAGT GGCCAGAGCA
  Y
  TGTGCACCTC TATTTTTCTA AATCAGTGAA GCTAGTTCTG CTAACAATGA AGTCTATCTT
  GCCAATTTCA GGGCTTCTGT GACCTTTTAC ATTCTGTCAG GATCTTTCAT AGTTGTCATC
  TTGGAGGCTT ACTGCTGAAT AAGATTATCC TTCCTAGCTC TTTCTAAACT CTGGCTGGTT
  CAACTCAGTT ATTTTGGCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325500505	CHEV_17_88366823	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108443101					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:88274911 () rs orientation: forward

Symbol	Name	Function Class
Gm50041	predicted gene, 50041	1521 bp downstream
Rr333904	regulatory region 333904	890 bp proximal
Rr343663	regulatory region 343663	1003 bp proximal
Rr393088	regulatory region 393088	1766 bp downstream