rs108443772 SNP Detail

Summary

• ID
  rs108443772
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57411819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTCTATC TGGACTCTCC
  AGCCTTCTGT TTCTGGAGTC CTAAGAGACT ACTAACAGGA AGCCCCAAGA AAGTGGGTGG
  GGACACACCA GGAAAGGCCC AGGGTAGAGA TGGGGTCCTG GGGAGGAAGA GGCTGAGTGA
  GTGGGTGCCT AGCAGGTCTC TTTGATTCCG CTGGGGATGG GTGGGCAGTT TTGGATGTCC
  Y
  TAGAGTCCTC GACAAAACAA CAACAACAAA AAACAAAACA AAACAAAACA AAACAACAAC
  AAAACCCCCT GCATTTAGGG CGTCCCAGGG ATGGGGAGCT AGGGGTTGGA AGAAAAAGGG
  AGCAGGAGAG ATCAGGAGAG AGACAGAAGT TTGAGAGACA GAAAAACAGG AATGAAAATC
  AGCAGCGGAG AAATAACCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	JF1/MsJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
ss398570655	MGP_WTSI_17_57244242	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	JF1/MsJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
rs108443772					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398570655	MGP_WTSI_17_57244242	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57411819 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9396	CpG island 9396	373 bp proximal
Gm11110	predicted gene 11110	within coordinates
Rr529280	regulatory region 529280	16 bp proximal
Rr529281	regulatory region 529281	704 bp proximal
Tnfsf9	tumor necrosis factor (ligand) superfamily, member 9	506 bp upstream
Tssr145375	transcription start site region 145375	582 bp upstream
Tssr145376	transcription start site region 145376	1813 bp upstream
Tssr148901	transcription start site region 148901	1097 bp downstream