rs108450754 SNP Detail

Summary

• ID
  rs108450754
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:16726698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTGTTGT TGCTTAAGCC
  TGATAATAGT GGCCTACGTA AAGCCTAGTA GACAGAGGCT GAGGCAGGAG GATCCCTGAA
  AGTTTGAGGC CACGTGGGAT ACATAAACTA AGAACTGAGG GTACAACATC TCTGTGATCT
  TAAAGGTTTT TTTATTTTTA AGAAAATTTT TTATTTAAAA AATATATTTA TTTTATGTGC
  W
  TTGGTGTTTT GATGTATATC AGTGGGGGGG GGGTGTTAAA TCCCCTAGAG GTGGGGTTAC
  AGACATTTAT GAGCATTATG TGGGTGCTGG GAATTGAACC CAGGTCCTCT GAAAGAGCAG
  CCTGTGCTTT TAACCATGGA GCCATTTCTC CAACTCCAAG AAAATATTTT ACTTTAAAAA
  CGTGTTTATC GGGCTGGGCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148402123	ENSMUSSNP3106216	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs108450754					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16726698 () rs orientation: forward

Symbol	Name	Function Class
Ccdc8	coiled-coil domain containing 8	mRNA-UTR
Cpgi18410	CpG island 18410	1218 bp proximal
Rr642838	regulatory region 642838	55 bp distal
Tssr64672	transcription start site region 64672	1025 bp upstream
Tssr64673	transcription start site region 64673	1092 bp upstream
Tssr64674	transcription start site region 64674	1204 bp upstream