rs108457339 SNP Detail

Summary

• ID
  rs108457339
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:45858774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCTCTTA ACAGGTGGGG
  CCCTGACCTC TTGTAGATAT TGCCAGTCCT GGGTTGCAAG AGGAGCCATT CTCCGTTAGC
  TCACGCACCT CTCTCTCCCT CACAGACAAT CTAACGCTTC CAGGTCAGTC TCATCCTTCC
  CACCTCCTCT GTGTCCTTCT GTGAGTCTCC CTACTATTCA CACACACACA CACCCCTTCC
  C
  GGTGAGCACA CATTCTTCCT CTCTATTCTA GGATGGGAAA GAGGGAATGG GGCCCCTTGG
  CAGAGGAGAT GGGGGTATGA ACCATAGGTA AGGAAGACAT TGAAAGCTCT CAGGCATTTG
  TCACAAATGT TTGATCCTCT CCCAGGGCCA TTCTGTTAAA AGCACTTGGT ACCTTCTGAG
  TTGTTTACAT GTCTAGTTCT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325403378	CHEV_17_45684797	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108457339					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:45858774 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9190	CpG island 9190	1667 bp distal
Cpgi9191	CpG island 9191	742 bp distal
Cpgi9192	CpG island 9192	707 bp proximal
Tmem151b	transmembrane protein 151B	within coordinates
Tssr148206	transcription start site region 148206	1698 bp downstream
Tssr148207	transcription start site region 148207	1807 bp downstream
Tssr148208	transcription start site region 148208	1839 bp downstream