rs108458371 SNP Detail

Summary

• ID
  rs108458371
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:87612708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTC GTCGGCCTCC GAGCAGCCGT
  G
  CTCCCCCGCG CCTCCGCTAC GGCTG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss136773417	ENSMUSSNP5599582	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs108458371					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:87612708 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22111	CpG island 22111	within coordinates
D030062O11Rik	RIKEN cDNA D030062O11 gene	within coordinates
Gm69731	predicted gene, 69731	1612 bp downstream
Rr684220	regulatory region 684220	595 bp proximal
Rr684221	regulatory region 684221	758 bp proximal
Rr684222	regulatory region 684222	1612 bp proximal
Tbx18	T-box18	within coordinates
Tssr2959	transcription start site region 2959	582 bp downstream
Tssr90806	transcription start site region 90806	481 bp downstream
Tssr90807	transcription start site region 90807	508 bp downstream
Tssr90808	transcription start site region 90808	593 bp downstream
Tssr90809	transcription start site region 90809	619 bp downstream