rs108459668 SNP Detail

Summary

• ID
  rs108459668
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:28396783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGTCGTGCC CACCCTCCTC
  GGTCCCTGGC CTGGCGGCTG GGCCTCCCTG GACGGCGGCC TGGCCCCACC CCCACCCAGG
  GTCCCTGCCC CTCCATCCCG CCCTGAGACT CCTCCCCCAG GACTCCCAAA CCCCGCCCTC
  CTCCTCCTCC TTGACCCCAT ACACACACTC CTGACCCCCA GACCTCACAA GGCGACCCCC
  R
  ATTCATTGAG TGCTAACCCC AGCCCTGCTT CTGGACCCTC CAGTCTCAGT GCTGATACAA
  TCATTACATG GCTTCCAAGA GGCCCGTAGT CCCTAGTGAC CCCCTAGACT ACCCTCTGTG
  GGCACCCCTT AGTCCTCTCC TGGCTTCTGC AAACCAGACT CGGGCTGTTT CCCACCCACT
  CATCCACATA ACTCGTGATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325352120	CHEV_17_28314754	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108459668					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28396783 () rs orientation: forward

Symbol	Name	Function Class
C230013L11Rik	RIKEN cDNA C230013L11 gene	127 bp upstream
Cpgi8870	CpG island 8870	within coordinates
Rr339474	regulatory region 339474	within coordinates
Tssr143392	transcription start site region 143392	595 bp downstream
Tssr143393	transcription start site region 143393	360 bp downstream
Tssr147097	transcription start site region 147097	127 bp upstream
Zfp523	zinc finger protein 523	within coordinates